Bioinformatics Web Sites Collection
  1. The European Bioinformatics Institute.
  2. NCBI (National Centre for Biotechnology Information, USA).
  3. The ENSEMBL project.
  4. The NHGRI (National Human Genome Research Institute, USA).
  5. ExPASy.
  6. MIPS (Munich Information Centre for Protein Sequences).
  7. The Sanger Centre.
  8. The DBCat database of biological databases.
  9. SRS at the EBI.
  10. The EBI Macromolecular structure database.
  11. The International Society for Computational Biology.
  12. The RSCB.
  13. The RSCB software pages.
  14. Biomolecular structure and modelling group at University College, London.
  15. The Scripps research institute.
  16. Autodock molecular docking software.
  17. The Barton group web server (including JPred, 3Dee and AMAS).
  18. The CATH protein structure classification.
  19. The SCOP protein structure classification.
  20. The DALI protein structure comparison server.
  21. The Swiss-Model homology modelling server.
  22. The EMBL PredictProtein Server.
  23. Transmembrane segment prediction with TMPred.
  24. The PROSITE database.
  25. The PRINTS database.
  26. The BLOCKS database.
  27. The PIR (Protein Information Resource).
  28. Sue Jones' protein-protein interaction server.
  29. PMDG protein modelling discussion group.
  30. The PROMISE database of prosthetic groups and metal ions in protein active sites.
  31. The CASP2 home page.
  32. Peer Bork's modules work (SMART).
  33. 3Dee domain definition database.
  34. The ProDom. database of automatically derived sequence domains.
  35. The Pfam database of protein sequence domains.
  36. Terry Gaasterland's genome projects page.
  37. Nikos Kyrpides' complete genomes page.
  38. KEGG database of metabolic pathways.
  39. Alvis Brazma's datamining page.
  40. The PRATT project (pattern discovery in sequences).
  41. PHYLIP phylogenetic tree generation software.
  42. WU-BLAST sequence database searching software.
  43. CCP11.
  44. CCP4.
  45. The PASTA home page.
  46. SPOCK molecular modelling software.
  47. ModBase database of comparative protein structure models.
  48. EMBOSS European Molecular Biology Open Software Suite.
  49. Honig group at Columbia (GRASP, DelPhi, ...).
  50. The CCL (Computational Chemistry List).
  51. PSI-PRED (David Jones' structure prediction server).